I think people are going in two different directions with their views, not that this is a bad thing but that causes people to think in terms of right and wrong as opposed to different but same.
We do know how our PERCEPTION of taste works, that doesn't mean the science can or should comment on WHY someone likes the taste of orange and someone doesn't.
Reality is based on our understanding and perception of it, we can NOT experience reality OUTSIDE how we perceive it.
While certain things are know to be real in our universe ( 1+1 = 2), there is no reason to believe that may be the case in any other universe, if there is any other(s).
And while we do have certain "certainties", we also do have to accept that the reality of today may not be the reality of tomorrow, just as the reality of 2000 years ago is NOT the reality of today.
Our understanding of how "things are and why" is ever changing and based on our understanding, perception and ability to rationalize the universe as we "know" it at any given point in time.
In short, the miracles of 2000 years ago, may be the reality of 500 years from now.
Heck, it took less than 2000 years to imitate the deed of the Holy Spirit in creating a "virgin birth", which we can do know through science ( a woman can get pregnant and give birth without ever losing her virginity).